To cite package ‘AiES’ in publications use:

  Tokunaga S (2025). _AiES: Axon Integrity Evaluation System for
  Microscopy Images_. R package version 0.99.6,
  <https://github.com/breezycave/aies>.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {AiES: Axon Integrity Evaluation System for Microscopy Images},
    author = {Shinji Tokunaga},
    year = {2025},
    note = {R package version 0.99.6},
    url = {https://github.com/breezycave/aies},
  }