{
  "_id": "6a1e81bb1d7bb097a0a66708",
  "Package": "AiES",
  "Type": "Package",
  "Title": "Axon Integrity Evaluation System for Microscopy Images",
  "Version": "0.99.6",
  "Authors@R": "c(\nperson(\"Shinji\", \"Tokunaga\", email = \"tokunaga@ncnp.go.jp\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-8398-3054\")),\nperson(\"Masafumi\", \"Funakoshi\", email = \"funakoshi@ncnp.go.jp\", role = \"ctb\"),\nperson(\"Toshiyuki\", \"Araki\", email = \"taraki@ncnp.go.jp\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3625-2042\"))\n)",
  "Maintainer": "Shinji Tokunaga <tokunaga@ncnp.go.jp>",
  "Description": "Provides tools for the quantitative analysis of axon\nintegrity in microscopy images. It implements image\npre-processing, adaptive thresholding, feature extraction, and\nsupport vector machine-based classification to compute indices\nsuch as the Axon Integrity Index (AII) and Degeneration Index\n(DI). The package is designed for reproducible and automated\nanalysis in neuroscience research.",
  "License": "BSD_3_clause + file LICENSE",
  "Copyright": "2025 National Center of Neurology and Psychiatry",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "URL": "https://github.com/BreezyCave/AiES",
  "BugReports": "https://github.com/BreezyCave/AiES/issues",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake libfftw3-dev make libjpeg-dev libpng-dev\nlibtiff-dev libuv1-dev",
  "Repository": "https://breezycave.r-universe.dev",
  "Date/Publication": "2025-06-04 15:51:41 UTC",
  "RemoteUrl": "https://github.com/breezycave/aies",
  "RemoteRef": "HEAD",
  "RemoteSha": "66296a915527d8b6cf86a2b15d024c34f3f26482",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-02 07:05:37 UTC",
    "User": "root"
  },
  "Author": "Shinji Tokunaga [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-8398-3054>),\nMasafumi Funakoshi [ctb],\nToshiyuki Araki [ctb] (ORCID: <https://orcid.org/0000-0003-3625-2042>)",
  "MD5sum": "606c21c30fb78dcf443c095b108811b8",
  "_user": "breezycave",
  "_type": "src",
  "_file": "AiES_0.99.6.tar.gz",
  "_fileid": "c333f64535ab5019042fa92de78ec16cf5b8712bb32abb254da6dbed86fee2ca",
  "_filesize": 1165425,
  "_sha256": "c333f64535ab5019042fa92de78ec16cf5b8712bb32abb254da6dbed86fee2ca",
  "_created": "2026-06-02T07:05:37.000Z",
  "_published": "2026-06-02T07:09:47.022Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79017526102,
      "time": 138,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7351146058"
    },
    {
      "job": 79017525916,
      "time": 135,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7351145512"
    },
    {
      "job": 79017525985,
      "time": 209,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7351156362"
    },
    {
      "job": 79017525875,
      "time": 205,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7351151905"
    },
    {
      "job": 79017050605,
      "time": 212,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7351106998"
    },
    {
      "job": 79017525803,
      "time": 116,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7351140165"
    },
    {
      "job": 79017525877,
      "time": 98,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7351135537"
    },
    {
      "job": 79017525925,
      "time": 85,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7351131962"
    },
    {
      "job": 79017525815,
      "time": 96,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7351134464"
    }
  ],
  "_buildurl": "https://github.com/r-universe/breezycave/actions/runs/26804010629",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/breezycave/aies",
  "_commit": {
    "id": "66296a915527d8b6cf86a2b15d024c34f3f26482",
    "author": "Shinji TOKUNAGA <34032561+BreezyCave@users.noreply.github.com>",
    "committer": "Shinji TOKUNAGA <34032561+BreezyCave@users.noreply.github.com>",
    "message": "0.99.6_04\n",
    "time": 1749052301
  },
  "_maintainer": {
    "name": "Shinji Tokunaga",
    "email": "tokunaga@ncnp.go.jp",
    "orcid": "0000-0001-8398-3054"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "EBImage",
      "role": "Imports"
    },
    {
      "package": "e1071",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "fs",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Suggests"
    },
    {
      "package": "stringr",
      "role": "Suggests"
    },
    {
      "package": "colorspace",
      "role": "Suggests"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "tcltk",
      "role": "Suggests"
    },
    {
      "package": "rstudioapi",
      "role": "Suggests"
    },
    {
      "package": "svDialogs",
      "role": "Suggests"
    }
  ],
  "_owner": "breezycave",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-23",
      "n": 6
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "breezycave",
      "count": 81,
      "uuid": 34032561
    }
  ],
  "_userbio": {
    "uuid": 34032561,
    "type": "user",
    "name": "Shinji TOKUNAGA"
  },
  "_downloads": {
    "count": 557,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/AiES"
  },
  "_devurl": "https://github.com/breezycave/aies",
  "_searchresults": 4,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/AiES.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/breezycave/aies",
  "_realowner": "breezycave",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.99.6",
      "date": "2025-06-06"
    }
  ],
  "_exports": [
    "axDistmap",
    "axQnt",
    "axSvm"
  ],
  "_help": [
    {
      "page": "Axdistmap",
      "title": "Create distance map and binary image from TIFF image file",
      "topics": [
        "axDistmap"
      ]
    },
    {
      "page": "AxQnt",
      "title": "Quantify Axon Integrity and Degeneration Indices from Images or Feature Data",
      "topics": [
        "axQnt"
      ]
    },
    {
      "page": "Axsvm",
      "title": "Build SVM Classifier for Axon Image Feature Classification",
      "topics": [
        "axSvm"
      ]
    }
  ],
  "_readme": "https://github.com/breezycave/aies/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "base64enc",
    "BiocGenerics",
    "bitops",
    "bslib",
    "cachem",
    "class",
    "cli",
    "data.table",
    "digest",
    "e1071",
    "EBImage",
    "evaluate",
    "fastmap",
    "fftwtools",
    "fontawesome",
    "fs",
    "generics",
    "highr",
    "htmltools",
    "htmlwidgets",
    "jpeg",
    "jquerylib",
    "jsonlite",
    "knitr",
    "lattice",
    "lifecycle",
    "locfit",
    "MASS",
    "memoise",
    "mime",
    "png",
    "proxy",
    "R6",
    "rappdirs",
    "RCurl",
    "rlang",
    "rmarkdown",
    "sass",
    "tiff",
    "tinytex",
    "xfun",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "Introduction_to_AiES_ver250527.Rmd",
      "filename": "Introduction_to_AiES_ver250527.html",
      "title": "Introduction to AiES: Axon integrity Evaluation System",
      "author": "Shinji Tokunaga, Masafumi Funakoshim, Toshiyuki Araki",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Typical Workflow",
        "1. Feature Extraction from Images (axDistmap)",
        "2. Building an SVM Classifier (axSvm)",
        "3. Quantitative Analysis (axQnt)",
        "Advanced Usage",
        "Exporting All Features",
        "Summary",
        "Source code and issues"
      ],
      "created": "2025-05-27 05:54:51",
      "modified": "2025-05-27 07:48:30",
      "commits": 2
    }
  ],
  "_score": 3.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "aies",
  "_universes": [
    "breezycave"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.99.6",
      "date": "2026-06-02T07:07:48.000Z",
      "distro": "noble",
      "commit": "66296a915527d8b6cf86a2b15d024c34f3f26482",
      "fileid": "2ac8a9ce19ee578faad4c1b146cef0469c01f0069be1409744efbaeb985097db",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/breezycave/actions/runs/26804010629"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.99.6",
      "date": "2026-06-02T07:07:48.000Z",
      "distro": "noble",
      "commit": "66296a915527d8b6cf86a2b15d024c34f3f26482",
      "fileid": "14fb5c403f3c56db7b001da2b61dd3c68088d11c32bad3086e2d61a57d063349",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/breezycave/actions/runs/26804010629"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.99.6",
      "date": "2026-06-02T07:08:28.000Z",
      "commit": "66296a915527d8b6cf86a2b15d024c34f3f26482",
      "fileid": "1af03bdc13f5d1c6593d52c13ce8f7bb8691d29d47a049a01c6feb54d69e098d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/breezycave/actions/runs/26804010629"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.99.6",
      "date": "2026-06-02T07:08:05.000Z",
      "commit": "66296a915527d8b6cf86a2b15d024c34f3f26482",
      "fileid": "59bb6515bb6e703c12ae3481087eb23910aff9730f3dd61891af1d55a12f5a5f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/breezycave/actions/runs/26804010629"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.99.6",
      "date": "2026-06-02T07:07:51.000Z",
      "commit": "66296a915527d8b6cf86a2b15d024c34f3f26482",
      "fileid": "d0bdda467578ad717095654fdb85c804dbf8242a426d52cd763e450573f1df86",
      "status": "success",
      "buildurl": "https://github.com/r-universe/breezycave/actions/runs/26804010629"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.99.6",
      "date": "2026-06-02T07:06:59.000Z",
      "commit": "66296a915527d8b6cf86a2b15d024c34f3f26482",
      "fileid": "8a8eb4f852745dc8410b676d8b83e178ed8ac1a9da6bf28c2c9b10294e535193",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/breezycave/actions/runs/26804010629"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.99.6",
      "date": "2026-06-02T07:06:49.000Z",
      "commit": "66296a915527d8b6cf86a2b15d024c34f3f26482",
      "fileid": "1b377c2190273b9d719ac7c1110ad08b87dfe911e0e0bddd0cbfe1b506b9d4de",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/breezycave/actions/runs/26804010629"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.99.6",
      "date": "2026-06-02T07:06:58.000Z",
      "commit": "66296a915527d8b6cf86a2b15d024c34f3f26482",
      "fileid": "b8083e3f4fc38c5ad00d9616478b4b60ca33e358f2670bbbb320e75e54019bb8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/breezycave/actions/runs/26804010629"
    }
  ]
}