Introduction | Typical Workflow | 1. Feature Extraction from Images (axDistmap) | 2. Building an SVM Classifier (axSvm) | 3. Quantitative Analysis (axQnt) | Advanced Usage | Built-in models | Pixel size and image formats | Exporting all features | Training and applying a custom model | Sampling and reproducibility | Quantifying from feature tables | Upgrading from AiES 0.99.x | Summary | Source code and issues
Package: AiES 1.0.0
Shinji Tokunaga
AiES: Axon Integrity Evaluation System for Microscopy Images
Provides tools for the quantitative analysis of axon integrity in phase-contrast microscopy images. 'AiES' (Axon integrity Evaluation System) implements image pre-processing, adaptive thresholding, feature extraction, and support vector machine-based classification to compute indices such as the Axon Integrity Index (AII) and Degeneration Index (DI). Two built-in models are provided, and classifiers can be re-trained on user data. The package is designed for reproducible and automated analysis in neuroscience research.
Authors:
AiES_1.0.0.tar.gz
AiES_1.0.0.zip(r-4.7-any)AiES_1.0.0.zip(r-4.6-any)AiES_1.0.0.zip(r-4.5-any)
AiES_1.0.0.tgz(r-4.6-any)AiES_1.0.0.tgz(r-4.5-any)
AiES_1.0.0.tar.gz(r-4.7-any)AiES_1.0.0.tar.gz(r-4.6-any)
AiES_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
AiES/json (API)
| # Install 'AiES' in R: |
| install.packages('AiES', repos = c('https://breezycave.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/breezycave/aies/issues
Last updated from:2f9c9d0160. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 143 | ||
| source / vignettes | OK | 179 | ||
| linux-release | OK | 118 | ||
| macos-release | OK | 114 | ||
| macos-oldrel | OK | 110 | ||
| windows-devel | OK | 88 | ||
| windows-release | OK | 78 | ||
| windows-oldrel | OK | 86 | ||
| wasm-release | OK | 97 |
Dependencies:abindbase64encBiocGenericsbitopsbslibcachemclassclidata.tabledigeste1071EBImageevaluatefastmapfftwtoolsfontawesomefsgenericshighrhtmltoolshtmlwidgetsjpegjquerylibjsonliteknitrlatticelifecyclelocfitmemoisemimepngproxyR6rappdirsRCurlrlangrmarkdownrstudioapisasstifftinytexxfunyaml
